A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence
- Details
- Category: HIV based Lentiviral Vectors
- Created: Monday, 21 December 2015 22:06
- Written by Vineet D Menachery, Boyd L Yount Jr, Kari Debbink, Sudhakar Agnihothram, Lisa E Gralinski, Jessica A Plante, Rachel L Graham, Trevor Scobey, Xing-Yi Ge, Eric F Donaldson, Scott H Randell, Antonio Lanzavecchia, Wayne A Marasco, Zhengli-Li Shi, Ralph S Bari
Abstract
The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome (MERS)-CoV underscores the threat of cross-species transmission events leading to outbreaks in humans. Here we examine the disease potential of a SARS-like virus, SHC014-CoV, which is currently circulating in Chinese horseshoe bat populations. Using the SARS-CoV reverse genetics system, we generated and characterized a chimeric virus expressing the spike of bat coronavirus SHC014 in a mouse-adapted SARS-CoV backbone. The results indicate that group 2b viruses encoding the SHC014 spike in a wild-type backbone can efficiently use multiple orthologs of the SARS receptor human angiotensin converting enzyme II (ACE2), replicate efficiently in primary human airway cells and achieve in vitro titers equivalent to epidemic strains of SARS-CoV.
Additionally, in vivo experiments demonstrate replication of the chimeric virus in mouse lung with notable pathogenesis. Evaluation of available SARS-based immune-therapeutic and prophylactic modalities revealed poor efficacy; both monoclonal antibody and vaccine approaches failed to neutralize and protect from infection with CoVs using the novel spike protein. On the basis of these findings, we synthetically re-derived an infectious full-length SHC014 recombinant virus and demonstrate robust viral replication both in vitro and in vivo. Our work suggests a potential risk of SARS-CoV re-emergence from viruses currently circulating in bat populations.
Conflict of interest statement
The authors declare no competing financial interests.
Figures
Similar articles
-
Effects of human anti-spike protein receptor binding domain antibodies on severe acute respiratory syndrome coronavirus neutralization escape and fitness.J Virol. 2014 Dec;88(23):13769-80. doi: 10.1128/JVI.02232-14. Epub 2014 Sep 17.PMID: 25231316 Free PMC article.
-
Evolutionary Arms Race between Virus and Host Drives Genetic Diversity in Bat Severe Acute Respiratory Syndrome-Related Coronavirus Spike Genes.J Virol. 2020 Sep 29;94(20):e00902-20. doi: 10.1128/JVI.00902-20. Print 2020 Sep 29.PMID: 32699095 Free PMC article.
-
Difference in receptor usage between severe acute respiratory syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin.J Virol. 2008 Feb;82(4):1899-907. doi: 10.1128/JVI.01085-07. Epub 2007 Dec 12.PMID: 18077725 Free PMC article.
-
SARS-CoV replication and pathogenesis in an in vitro model of the human conducting airway epithelium.Virus Res. 2008 Apr;133(1):33-44. doi: 10.1016/j.virusres.2007.03.013. Epub 2007 Apr 23.PMID: 17451829 Free PMC article. Review.
-
Replication of MERS and SARS coronaviruses in bat cells offers insights to their ancestral origins.Emerg Microbes Infect. 2018 Dec 10;7(1):209. doi: 10.1038/s41426-018-0208-9.PMID: 30531999 Free PMC article.
Cited by 388 articles
-
In Silico and In Vitro Identification of Pan-Coronaviral Main Protease Inhibitors from a Large Natural Product Library.Pharmaceuticals (Basel). 2022 Mar 3;15(3):308. doi: 10.3390/ph15030308.PMID: 35337106 Free PMC article.
-
Dissecting the Species-Specific Virome in Culicoides of Thrace.Front Microbiol. 2022 Mar 7;13:802577. doi: 10.3389/fmicb.2022.802577. eCollection 2022.PMID: 35330767 Free PMC article.
-
Classifying COVID-19 based on amino acids encoding with machine learning algorithms.Chemometr Intell Lab Syst. 2022 May 15;224:104535. doi: 10.1016/j.chemolab.2022.104535. Epub 2022 Mar 15.PMID: 35308181 Free PMC article.
-
Rationally designed immunogens enable immune focusing following SARS-CoV-2 spike imprinting.Cell Rep. 2022 Mar 22;38(12):110561. doi: 10.1016/j.celrep.2022.110561. Epub 2022 Mar 7.PMID: 35303475 Free PMC article.
-
Vaccine Candidate Against COVID-19 Based on Structurally Modified Plant Virus as an Adjuvant.Front Microbiol. 2022 Feb 28;13:845316. doi: 10.3389/fmicb.2022.845316. eCollection 2022.PMID: 35295298 Free PMC article.
References
- Ge XY, et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature. 2013;503:535–538. doi: 10.1038/nature12711. - DOI - PMC - PubMed
- Yount B, et al. Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus. Proc. Natl. Acad. Sci. USA. 2003;100:12995–13000. doi: 10.1073/pnas.1735582100. - DOI - PMC - PubMed
- Becker MM, et al. Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice. Proc. Natl. Acad. Sci. USA. 2008;105:19944–19949. doi: 10.1073/pnas.0808116105. - DOI - PMC - PubMed
- Peiris JS, Guan Y, Yuen KY. Severe acute respiratory syndrome. Nat. Med. 2004;10:S88–S97. doi: 10.1038/nm1143. - DOI - PMC - PubMed
- Al-Tawfiq JA, et al. Surveillance for emerging respiratory viruses. Lancet Infect. Dis. 2014;14:992–1000. doi: 10.1016/S1473-3099(14)70840-0. - DOI - PMC - PubMed
- He B, et al. Identification of diverse alphacoronaviruses and genomic characterization of a novel severe acute respiratory syndrome–like coronavirus from bats in China. J. Virol. 2014;88:7070–7082. doi: 10.1128/JVI.00631-14. - DOI - PMC - PubMed
- Li F. Receptor recognition and cross-species infections of SARS coronavirus. Antiviral Res. 2013;100:246–254. doi: 10.1016/j.antiviral.2013.08.014. - DOI - PMC - PubMed
- Sheahan T, et al. Mechanisms of zoonotic severe acute respiratory syndrome coronavirus host range expansion in human airway epithelium. J. Virol. 2008;82:2274–2285. doi: 10.1128/JVI.02041-07. - DOI - PMC - PubMed
- Yoshikawa T, et al. Dynamic innate immune responses of human bronchial epithelial cells to severe acute respiratory syndrome–associated coronavirus infection. PLoS ONE. 2010;5:e8729. doi: 10.1371/journal.pone.0008729. - DOI - PMC - PubMed
- Qiu X, et al. Reversion of advanced Ebola virus disease in nonhuman primates with ZMapp. Nature. 2014;514:47–53. doi: 10.1038/nature13777. - DOI - PMC - PubMed
- Sui J, et al. Broadening of neutralization activity to directly block a dominant antibody-driven SARS-coronavirus evolution pathway. PLoS Pathog. 2008;4:e1000197. doi: 10.1371/journal.ppat.1000197. - DOI - PMC - PubMed
- Sui J, et al. Effects of human anti–spike protein receptor binding domain antibodies on severe acute respiratory syndrome coronavirus neutralization escape and fitness. J. Virol. 2014;88:13769–13780. doi: 10.1128/JVI.02232-14. - DOI - PMC - PubMed
- Rockx B, et al. Escape from human monoclonal antibody neutralization affects in vitro and in vivo fitness of severe acute respiratory syndrome coronavirus. J. Infect. Dis. 2010;201:946–955. doi: 10.1086/651022. - DOI - PMC - PubMed
- Spruth M, et al. A double-inactivated whole-virus candidate SARS coronavirus vaccine stimulates neutralizing and protective antibody responses. Vaccine. 2006;24:652–661. doi: 10.1016/j.vaccine.2005.08.055. - DOI - PMC - PubMed
- Bolles M, et al. A double-inactivated severe acute respiratory syndrome coronavirus vaccine provides incomplete protection in mice and induces increased eosinophilic proinflammatory pulmonary response upon challenge. J. Virol. 2011;85:12201–12215. doi: 10.1128/JVI.06048-11. - DOI - PMC - PubMed
- Siegrist, C.-A. in Vaccines 6th edn. (eds. Plotkin, S.A., Orenstein, W.A. & Offit, P.A.) 14–32 (W.B. Saunders, 2013).
- Deming D, et al. Vaccine efficacy in senescent mice challenged with recombinant SARS-CoV bearing epidemic and zoonotic spike variants. PLoS Med. 2006;3:e525. doi: 10.1371/journal.pmed.0030525. - DOI - PMC - PubMed
- Graham RL, Donaldson EF, Baric RS. A decade after SARS: strategies for controlling emerging coronaviruses. Nat. Rev. Microbiol. 2013;11:836–848. doi: 10.1038/nrmicro3143. - DOI - PMC - PubMed
- Graham RL, Baric RS. Recombination, reservoirs and the modular spike: mechanisms of coronavirus cross-species transmission. J. Virol. 2010;84:3134–3146. doi: 10.1128/JVI.01394-09. - DOI - PMC - PubMed
- Agnihothram S, et al. A mouse model for betacoronavirus subgroup 2c using a bat coronavirus strain HKU5 variant. MBio. 2014;5:e00047–14. doi: 10.1128/mBio.00047-14. - DOI - PMC - PubMed
- Relman DA. Metagenomics, infectious disease diagnostics and outbreak investigations: sequence first, ask questions later? J. Am. Med. Assoc. 2013;309:1531–1532. doi: 10.1001/jama.2013.3678. - DOI - PubMed
- Kaiser, J. Moratorium on risky virology studies leaves work at 14 institutions in limbo. ScienceInsiderhttp://news.sciencemag.org/biology/2014/11/moratorium-risky-virology-stu... (2014).
- Frieman M, et al. Molecular determinants of severe acute respiratory syndrome coronavirus pathogenesis and virulence in young and aged mouse models of human disease. J. Virol. 2012;86:884–897. doi: 10.1128/JVI.05957-11. - DOI - PMC - PubMed
- Ren W, et al. Difference in receptor usage between severe acute respiratory syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin. J. Virol. 2008;82:1899–1907. doi: 10.1128/JVI.01085-07. - DOI - PMC - PubMed
- Sims AC, et al. Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. J. Virol. 2013;87:3885–3902. doi: 10.1128/JVI.02520-12. - DOI - PMC - PubMed
- Fulcher ML, Gabriel S, Burns KA, Yankaskas JR, Randell SH. Well-differentiated human airway epithelial cell cultures. Methods Mol. Med. 2005;107:183–206. - PubMed
- Roberts Anjeanette, Deming Damon, Paddock Christopher D., Cheng Aaron, Yount Boyd, Vogel Leatrice, Herman Brian D., Sheahan Tim, Heise Mark, Genrich Gillian L., Zaki Sherif R., Baric Ralph, Subbarao Kanta. A Mouse-Adapted SARS-Coronavirus Causes Disease and Mortality in BALB/c Mice. PLoS Pathogens. 2007;3(1):e5. doi: 10.1371/journal.ppat.0030005. - DOI - PMC - PubMed
- PMID: 26552008
- PMCID: PMC4797993
- DOI: 10.1038/nm.3985
- doi: 10.1038/nm.3985. Epub 2015 Nov 9.
Source : https://pubmed.ncbi.nlm.nih.gov/26552008/